Category Definition: FSM (Full Splice Match): The reference and query isoform have the same number of exons and each internal junction agree. The exact 5' start and 3' end can differ by any amount.
For more details on categories, visit here: SQANTI3 Wiki: Categories.
For a detailed explanation of each column of the table (SQANTI3 classification), see here: Column Glossary.
How to Filter:
100:1000 (values between 100 and 1000), 100: (>100), or :1000 (<1000). Single numbers perform an exact match.Generate Trix String (for UCSC Genome Browser search):
100:1000) are not supported by Trix and will be ignored, only exact numeric matches are supported.structural_category_full_splice_match, strand_plus, coding_coding).Generate Filter String (for Table Browser):
name field to create a custom track with only those isoforms.Total transcripts: 5241 | Close Window
| isoform | chrom | strand | length | exons | structural_category | associated_gene | associated_transcript | ref_length | ref_exons | diff_to_TSS | diff_to_TTS | diff_to_gene_TSS | diff_to_gene_TTS | subcategory | RTS_stage | all_canonical | min_sample_cov | min_cov | min_cov_pos | sd_cov | FL | n_indels | n_indels_junc | bite | iso_exp | gene_exp | ratio_exp | FSM_class | coding | ORF_length | CDS_length | CDS_start | CDS_end | CDS_genomic_start | CDS_genomic_end | predicted_NMD | perc_A_downstream_TTS | seq_A_downstream_TTS | dist_to_CAGE_peak | within_CAGE_peak | dist_to_polyA_site | within_polyA_site | polyA_motif | polyA_dist | polyA_motif_found | ratio_TSS |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| isoform | chrom | strand | length | exons | structural_category | associated_gene | associated_transcript | ref_length | ref_exons | diff_to_TSS | diff_to_TTS | diff_to_gene_TSS | diff_to_gene_TTS | subcategory | RTS_stage | all_canonical | min_sample_cov | min_cov | min_cov_pos | sd_cov | FL | n_indels | n_indels_junc | bite | iso_exp | gene_exp | ratio_exp | FSM_class | coding | ORF_length | CDS_length | CDS_start | CDS_end | CDS_genomic_start | CDS_genomic_end | predicted_NMD | perc_A_downstream_TTS | seq_A_downstream_TTS | dist_to_CAGE_peak | within_CAGE_peak | dist_to_polyA_site | within_polyA_site | polyA_motif | polyA_dist | polyA_motif_found | ratio_TSS |