SQANTI3 Analysis: full-splice_match Isoforms

ReferenceIsoform (FSM)

Category Definition: FSM (Full Splice Match): The reference and query isoform have the same number of exons and each internal junction agree. The exact 5' start and 3' end can differ by any amount.

For more details on categories, visit here: SQANTI3 Wiki: Categories.
For a detailed explanation of each column of the table (SQANTI3 classification), see here: Column Glossary.


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Total transcripts: 5241 | Close Window

isoformchromstrandlengthexonsstructural_categoryassociated_geneassociated_transcriptref_lengthref_exonsdiff_to_TSSdiff_to_TTSdiff_to_gene_TSSdiff_to_gene_TTSsubcategoryRTS_stageall_canonicalmin_sample_covmin_covmin_cov_possd_covFLn_indelsn_indels_juncbiteiso_expgene_expratio_expFSM_classcodingORF_lengthCDS_lengthCDS_startCDS_endCDS_genomic_startCDS_genomic_endpredicted_NMDperc_A_downstream_TTSseq_A_downstream_TTSdist_to_CAGE_peakwithin_CAGE_peakdist_to_polyA_sitewithin_polyA_sitepolyA_motifpolyA_distpolyA_motif_foundratio_TSS
isoformchromstrandlengthexonsstructural_categoryassociated_geneassociated_transcriptref_lengthref_exonsdiff_to_TSSdiff_to_TTSdiff_to_gene_TSSdiff_to_gene_TTSsubcategoryRTS_stageall_canonicalmin_sample_covmin_covmin_cov_possd_covFLn_indelsn_indels_juncbiteiso_expgene_expratio_expFSM_classcodingORF_lengthCDS_lengthCDS_startCDS_endCDS_genomic_startCDS_genomic_endpredicted_NMDperc_A_downstream_TTSseq_A_downstream_TTSdist_to_CAGE_peakwithin_CAGE_peakdist_to_polyA_sitewithin_polyA_sitepolyA_motifpolyA_distpolyA_motif_foundratio_TSS